PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00935.1_g00002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 327aa    MW: 35420.7 Da    PI: 6.857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00935.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-1854103255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Rsa1.0_00935.1_g00002.1  54 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAVFLYG 103
                              59****999.**********954...5**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.3E-1254103IPR001471AP2/ERF domain
SMARTSM003801.4E-3754117IPR001471AP2/ERF domain
CDDcd000185.02E-1954109No hitNo description
PROSITE profilePS5103222.19454111IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2054111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-2954111IPR001471AP2/ERF domain
PRINTSPR003672.5E-105566IPR001471AP2/ERF domain
PRINTSPR003672.5E-107793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MDPLPSQQQQ QLNLEDNIQQ TLNQNPQTDS TDSNSSGQQR KRKGKGGPDN SKFRYRGVRQ  60
RSWGKWVAEI REPRKRTRKW LGTFATAEDA ARAYDRAAVF LYGSRAQLNL SPSSPSSVSS  120
SSSTVSAASS SPSSSSSTQT LRPLLPRPSA ASSASAFGHY GVPFTNNIFL SGGTSMLCPS  180
YGLLPHHHQQ QHPDQMTQVG QFHHQPHQNL NSCNNNKTGA DVELTDVPVV NSASFRHEVA  240
LGQEQGGSGC NNNNNYSMEN MNSLAGSVGS SLSIPTAVVD PVGSMGMDPG YNMVGDGSST  300
GWPFGGEDEY SHWGSMWDFV DPFLLDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1855110359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740583.11e-173PREDICTED: ethylene-responsive transcription factor ABI4-like
SwissprotA0MES81e-134ABI4_ARATH; Ethylene-responsive transcription factor ABI4
TrEMBLA0A078IR311e-168A0A078IR31_BRANA; BnaC03g72510D protein
TrEMBLA0A0D3B6061e-168A0A0D3B606_BRAOL; Uncharacterized protein
STRINGBra000178.1-P1e-157(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105522433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.16e-85ERF family protein